Stiffness in stochastic chemically reacting systems: The implicit tau-leaping method
By Muruhan Rathinam, Linda R. Petzold, Yang Cao, Daniel T. Gillespie. 2003
466 citations recorded by the source corpus.
Subfields: Biomedical Engineering, Molecular Biology, Statistical and Nonlinear Physics
View Paper: https://www.semanticscholar.org/paper/4036275f932ff1b453e78cf1bbca1135b41b1682
How researchers see this paper
The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.
In Biomedical Engineering
- Tobias Jahnke
- Wilhelm Huisinga
- Kevin Burrage
- Santiago Schnell
- Thomas E. Turner
- Mustafa Hani Khammash
- Brian Munsky
- Daniel T. Gillespie
In Molecular Biology
- Tobias Jahnke
- Wilhelm Huisinga
- Kevin Burrage
- Thomas E. Turner
- Mustafa Hani Khammash
- Santiago Schnell
- Brian Munsky
- Daniel T. Gillespie
In Statistical and Nonlinear Physics
- Tobias Jahnke
- Wilhelm Huisinga
- Kevin Burrage
- Santiago Schnell
- Thomas E. Turner
- Mustafa Hani Khammash
- Brian Munsky
- Daniel T. Gillespie
Citations in the corpus
- Stochastic simulation of chemical kinetics. (2007, methodology): “To make it implicit by replacing x in the argument of the Poisson random variable with X(t+τ ), however, raises some serious questions in the context of Markov process theory, where updates are supposed to be past-forgetting; moreover, even if that replacement could be justified theoretically, there”
- Stochastic approaches for modelling in vivo reactions (2004, methodology): “We discuss some further streamlining of the algorithm by Gibson and Bruck (2000), Gillespie (2001), Burrage and Tian (2003), Rathinam et al. (2003) and Tian and Burrage (2004a) leading to greater computational efficiency.”
- A Dynamical Low-Rank Approach to the Chemical Master Equation (2008, methodology): “that many reaction events will occur without significantly changing the reaction propensities, allowing to locally approximate the inhomogenous Poisson process by a simpler distribution [17, 36, 7, 5].”
- The finite state projection algorithm for the solution of the chemical master equation. (2006, methodology): “Algorithm [3, 2], tau-Leaping [5, 11 ], and various methods that have made quasi-steady state ap-”