Getting the Noise Out of Gene Arrays

By E. Marshall. Science, 2004

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Advantages and limitations of current network inference methods (2010, background): “The large number of possible solutions (the large search space ), together with the restricted number of independent data points and the low information content of the available dat”
Integrating structured biological data by Kernel Maximum Mean Discrepancy (2006, methodology): “Recently, Marshall (2004) gave an extremely negative picture of cross-platform comparability — and hence the reliability and reproducibility — of microarray results, due to the various platforms and data analysis methods employed (Shi et al., 2005).”
The balance of reproducibility, sensitivity, and specificity of lists of differentially expressed genes in microarray studies (2008, background): “Criticism of and concerns about microarrays continue to appear in some of the most prestigious scientific journals [6-10], leading to a growing negative perception regarding microarray reproducibility, and hence reliability.”