The mitochondrial DNA molecule ofDrosophila yakuba: Nucleotide sequence, gene organization, and genetic code

By D. Clary, D. Wolstenholme. Journal of Molecular Evolution, 2005

984 citations recorded by the source corpus.

View Paper: https://www.semanticscholar.org/paper/39b76dc790d327a6f1dced9cf3f55270f7fa4610

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Citations in the corpus

Alleviating the taxonomic impediment of DNA barcoding and setting a bad precedent: names for ten species of ‘Astraptes fulgerator’ (Lepidoptera: Hesperiidae: Eudaminae) with DNA-based diagnoses (2010, background): “Positions of variable nucleotide sites in the COI gene are labelled according to the standard 648 bp ‘DNA barcode’ region, which corresponds to sites 1512–2159 in the Drosophila yakuba Burla, 1954 mitochondrial genome (Clary & Wolstenholme, 1985).”
Phylogeny of cockroaches (Insecta, Dictyoptera, Blattodea), with placement of aberrant taxa and exploration of out‐group sampling (2012, methodology): “We amplified and sequenced between 413 and 448 bp of 16S, corresponding to positions 2633–3068 of Drosophila yakuba (Clary & Wolstenholme, 1985a).”
How to sequence and annotate insect mitochondrial genomes for systematic and comparative genomics research (2014, methodology): “…were sequenced using the direct isolation of mtDNA either by differential centrifugation to separate mtDNA from nuclear DNA using caesium chloride or of tissue lysate to separate whole mitochondria from other cell components using sucrose (Clary & Wolstenholme, 1985; Crozier & Crozier, 1993).”
Higher‐level phylogeny and evolutionary history of Pentatomomorpha (Hemiptera: Heteroptera) inferred from mitochondrial genome sequences (2019, background): “Seventy-two of the pentatomomorphan mitochondrial genomes had the same gene order (GO) as that of Drosophila yakuba (Clary & Wolstenholme, 1985).”
Incorporating molecular evolution into phylogenetic analysis, and a new compilation of conserved polymerase chain reaction primers for animal mitochondrial DNA (2006, neutral): “yakuba complete sequence (Clary and Wolstenholme 1985).”
Mitochondrial markers for identification and phylogenetic studies in insects - A Review (2014, background): “show mitochondrial gene rearrangement scenario, mostly in tRNA genes but rarely in protein-coding and rRNA genes [10-13] with an exception in insect orders Thysanoptera and Phthiraptera that showed both type of rearrangements [14,15].”
Complete nucleotide sequence and organization of the mitogenome of endangered Eumenis autonoe (Lepidoptera: Nymphalidae) (2010, methodology): “…17 sequenced lepidopteran PCGs with three dipteran out Kim et al. 737 groups, including Bactrocera oleae (Nardi et al., 2003), Drosophila yakuba (Clary and Wolstenholme, 1985) and Anopheles gambiae (Beard et al., 1993) was constructed using CLUSTAL X software (Thompson et al., 1997) within…”
Molecular systematic and phylogenetic assessment of 34 calanoid copepod species of the Calanidae and Clausocalanidae (2003, positive): “The mtCOI primers are named based on position numbers of the Drosophila yakuba sequence ( Clary and Wolstenholme 1985 ).”
Invasion patterns inferred from cytochrome oxidase I sequences in three bryozoans, Bugula neritina, Watersipora subtorquata, and Watersipora arcuata (2006, background): “The number in the names of primers refers to the corresponding position of the 5¢ nucleotide in the annotated mitochondrial genome of Drosophila yakuba ( Clary and Wolstenholme 1985; GenBank accession: NC001322).”
Molecular phylogeny and systematics of the Pieridae (Lepidoptera: Papilionoidea): higher classification and biogeography (2006, methodology): “For COI, the consensus sequences were aligned against the published reference sequence for Drosophila yakuba (Clary & Wolstenholme, 1985) and/or other Lepidoptera sequences on GenBank; the final fragment was 1220 bp (corresponding to positions 1515−2734).”