SWISS‐MODEL and the Swiss‐Pdb Viewer: An environment for comparative protein modeling

By Nicolas Guex, Manuel C. Peitsch. 1997

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Citations in the corpus

The SWISS-MODEL Repository—new features and functionality (2016, methodology): “ProMod3 has been implemented based on the OpenStructure (21) library and re-places ProMod-II (22) used previously.”
14-3-3 proteins and survival kinases cooperate to inactivate BAD by BH3 domain phosphorylation. (2000, methodology): “MSDEF) on the BAK BH3 sequence (GRQLAIIGDDI) was optimized However, the genetic and biochemical data suggest that using SwissPdbViewer 3.1 (Guex and Peitsch, 1997) and QUANTA, 14-3-3 blocks BAD activity, at least in part, by promoting then modeled using ProModII (Peitsch 1996; Guex and Peitsch,…”
Homology Modeling a Fast Tool for Drug Discovery: Current Perspectives (2012, methodology): “SwissModel: SwissModel is accessible via a web server that accept the sequence to be modeled, and then delivers the model by an electronic mail[100].”
Xylanases, xylanase families and extremophilic xylanases. (2005, unknown): “[205] Guex, N.”
Dinitroanilines Bind α-Tubulin to Disrupt Microtubules (2004, methodology): “The amino acid sequences of Toxoplasma -tubulin (gi:161937) was fit to the structure of bovine tubulin (1JFF) by using the Swiss-Model Automated Comparative Protein Modeling Server (http:// www.expasy.ch/swissmod/) in the first approach mode (Guex and Peitsch, 1997).”
BALLView: a tool for research and education in molecular modeling (2006, methodology): “…has been developed [e.g. MESHI (Kalisman et al., 2005), PyMOL (Delano, 2002), RasMol (Sayle and Milner-White, 1995), Swiss-PdbViewer (Guex and Peitsch, 1997), VMD (Humphrey et al., 1996) and WebLabViewer (Discovery Studio; available at: http://www.accelrys.com/products/ dstudio/index.html).”
The SWISS-MODEL Repository and associated resources (2008, methodology): “The default output format for models in the Repository is the project ﬁle for the program DeepView (34); this program allows the underlying alignments to be adjusted manually and for the request to be resubmitted to Workspace for modelling.”
Interactive motif and fold recognition in protein structures (2002, methodology): “This has many advantages for the users: there is no need to install the programs, the database ®les or the PDB locally, it offers a familiar browser-based graphical user-interface, and the hits may be inspected using any molecular graphics viewer [such as Rasmol (Sayle & Milner-White, 1995), Chime (”