MrModeltest 2.2. Program Distributed by the Author

By J. Nylander. 2004

3,531 citations recorded by the source corpus.

View Paper: https://www.semanticscholar.org/paper/37797d7c3b2739c001e47a7c58b10defc3d1cad4

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Citations in the corpus

Horizontal and elevational phylogeographic patterns of Himalayan and Southeast Asian forest passerines (Aves: Passeriformes) (2012, methodology): “3 (Nylander, 2004), by setting the initial values of prior distributions accordingly for each parameter.”
Nuclear DNA from old collections of avian study skins reveals the evolutionary history of the Old World suboscines (Aves, Passeriformes) (2006, methodology): “The models for nucleotide substitutions used in the analyses were selected for each gene individually by applying the Akaike Information Criterion (AIC, Akaike 1973) and the program MrModeltest 2.2 (Nylander 2005) in conjunction with PAUP * (Swofford 1998).”
Botryosphaeriaceae associated with Terminalia catappa in Cameroon, South Africa and Madagascar (2010, methodology): “Before launching the Bayesian analyses, the best nucleotide substitution models for each dataset were separately determined with MrModelTest version 2.2 (Nylander 2004) and included in each partition in MrBayes v3.”
Molecular phylogeny of the mega‐diverse rove beetle tribe Staphylinini (Insecta, Coleoptera, Staphylinidae) (2010, methodology): “The maximum likelihood models for the three genes were calculated using jModelTest 0.1.1 (Posada 2008) and MrModeltest2 (Nylander 2004) using the Akaike information criterion (AIC).”
Higher genetic diversity in introduced than in native populations of the mussel Mytella charruana: evidence of population admixture at introduction sites (2009, unknown): “2 (Nylander, 2004).”
Cryptic species in Iphisa elegans Gray, 1851 (Squamata: Gymnophthalmidae) revealed by hemipenial morphology and molecular data (2012, methodology): “We used the software MrModeltest version 2.3 (Nylander, 2004) to select the substitution models that best fit each codon position of CYTB and the fragment as a whole according to the Akaike Information Criterion (Akaike, 1974).”
The age of the grasses and clusters of origins of C4 photosynthesis (2008, methodology): “2 (Nylander, 2004) chose the GTR 1 I 1 G as the best model for each gene.”
Cryptic genetic diversity in "widespread" Southeast Asian bird species suggests that Philippine avian endemism is gravely underestimated. (2010, methodology): “2 (Nylander, 2004) was used to select an appropriate evolutionary model for each partition using Akaike’s Information Criterion (Supplementary Table 3).”
Vast underestimation of Madagascar's biodiversity evidenced by an integrative amphibian inventory (2009, methodology): “A second step is the efficient implementation of conservation measures at a local scale which requires an understanding of spatial patterns of richness and endemism within these hotspots (5).”
Phylogenetic lineages in the Botryosphaeriaceae (2006, unknown): “First MrModeltest v. 2.2 (Nylander 2004) was used to determine the best nucleotide substitution model.”
Ceriporiopsis kunmingensis sp. nov. (Polyporales, Basidiomycota) evidenced by morphological characters and phylogenetic analysis (2016, methodology): “MrModeltest 2.3 (Posada and Crandall 1998; Nylander 2004) was used to determine the best-fit evolution model for each dataset for Bayesian inference (BI).”
As Time Goes by: A Simple Fool's Guide to Molecular Clock Approaches in Invertebrates* (2009, methodology): “The data set was analysed in MrModeltest 2.3.”
SYSTEMATICS OF GRATELOUPIA FILICINA (HALYMENIACEAE, RHODOPHYTA), BASED ON rbcL SEQUENCE ANALYSES AND MORPHOLOGICAL EVIDENCE, INCLUDING THE REINSTATEMENT OF G. MINIMA AND THE DESCRIPTION OF G. CAPENSIS SP. NOV. 1 (2005, methodology): “MrModeltest v1.”
The Colletotrichum acutatum species complex (2012, methodology): “…and combinable, tree topologies of 70 % reciprocal Neighbour-Joining bootstrap with Maximum Likelihood distances (10 000 replicates) with substitution models determined separately for each partition using MrModeltest v. 2.3 (Nylander 2004) were compared visually (Mason-Gamer & Kellogg 1996).”
Roussoellaceae , a new pleosporalean family to accommodate the genera Neoroussoella gen. nov., Roussoella and Roussoellopsis (2014, unknown): “The model of evolution was estimated by using MrModeltest 2.2 (Nylander 2004).”
Microfungi associated with Clematis (Ranunculaceae) with an integrated approach to delimiting species boundaries (2020, methodology): “The best fitting substitution model for each single gene partition and the concatenated data set was determined in MrModeltest 2.3 (Nylander 2004) for Bayesian inference posterior probabilities and ML. Maximum likelihood analyses, including 1000 bootstrap replicates, were performed using the…”
Anchored hybrid enrichment for massively high-throughput phylogenomics. (2012, methodology): “We began by identifying the most appropriate model of sequence evolution for each of the loci in the two data sets using an AIC test implemented in MrModelTest (version 2; Nylander 2004), which is based on ModelTest (Posada and Crandall 2001).”