High-Throughput Genomic Data in Systematics and Phylogenetics

By E. Lemmon, Alan R. Lemmon. 2013

482 citations recorded by the source corpus.

Subfields: Genetics, Molecular Biology, Paleontology

View Paper: https://www.semanticscholar.org/paper/361e6443262e834084ec468ccac94bc59a3b95ee

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Citations in the corpus

StarBEAST2 Brings Faster Species Tree Inference and Accurate Estimates of Substitution Rates (2016, background): “The throughput of sequencing technologies has improved many-fold over the past two decades culminating in next generation sequencing (NGS), and it is now feasible to sequence whole or partial genomes or transcriptomes for phylogenetic studies (Lemmon and Lemmon, 2013).”
Anchored hybrid enrichment provides new insights into the phylogeny and evolution of longhorned beetles (Cerambycidae) (2018, background): “Therefore, in cases where high-quality RNA is unobtainable, hybrid enrichment is typically the © 2017 The Royal Entomological Society, Systematic Entomology, 43, 68–89 preferred approach (Lemmon & Lemmon, 2013).”
Applications of next-generation sequencing to the study of biological invasions (2015, background): “…reported in the fields of population genomics (Luikart et al., 2003), adaptive evolution (Stapley et al., 2010; Turner et al., 2010), phylogenetics (Lemmon and Lemmon, 2013), conservation biology (Angeloni et al., 2012), microbial metagenomics (Laserson et al., 2011), environmental monitoring…”
Using nuclear gene data for plant phylogenetics: Progress and prospects II. Next‐gen approaches (2015, background): “The gene tree/species tree reconciliation also becomesmuchmore complex (Liu et al., 2009a, 2009b; Larget et al., 2010; Ness et al., 2011; Lemmon & Lemmon, 2013).”
Enriching the ant tree of life: enhanced UCE bait set for genome‐scale phylogenetics of ants and other Hymenoptera (2017, unknown): “Advances in sequencing technology and laboratory protocols have invigorated phylogenetic systematics (Lemmon & Lemmon 2013; McCormack et al. 2013b; Yeates et al. 2016).”
MitoFinder: Efficient automated large‐scale extraction of mitogenomic data in target enrichment phylogenomics (2019, methodology): “More specifically, targeted enrichment or DNA sequence capture methods are becom - ing the gold standard in phylogenetic analyses because they allow subsampling the genome efficiently at reduced cost (Lemmon & Lemmon, 2013; McCormack et al., 2013).”
Anchored Hybrid Enrichment-Based Phylogenomics of Leafhoppers and Treehoppers (Hemiptera: Cicadomorpha: Membracoidea) (2017, background): “…and genome reduction methods that facilitate low-cost compilation and analysis of taxon-rich data sets comprising sequence data from hundreds of gene loci (Lemmon and Lemmon 2013) provide an opportunity to overcome these problems with traditional targeted sequencing of individual gene regions.”
Resolving the psyllid tree of life: phylogenomic analyses of the superfamily Psylloidea (Hemiptera) (2018, background): “…has been designed to recover hundreds of low or single-copy, phylogenetically informative markers from across the nuclear genome, and it is a useful approach for resolving evolutionary relationships in nonmodel lineages for which a good reference genome is lacking (Lemmon & Lemmon, 2013).”