Basal Angiosperm Phylogeny Inferred from Duplicate Phytochromes A and C

By S. Mathews, Michael J. Donoghue. INTERNATIONAL JOURNAL PLANT SCIENCES, 2000

112 citations recorded by the source corpus.

Subfields: Ecology, Evolution, Behavior and Systematics, Molecular Biology

View Paper: https://www.semanticscholar.org/paper/352a0b578d0d0b6853d8da57324354d09f76ad0f

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Citations in the corpus

Phylogenetic Relationships of the Perianthless Piperales: Reconstructing the Evolution of Floral Development (2004, methodology): “…of Lactoris to Aristolochiaceae already has been documented by several previous analyses using chloroplast and nuclear genes (Qiu et al. 1993; Mathews and Donoghue 1999; Graham and Olmstead 2000; Mathews and Donoghue 2000) and morphology (Donoghue and Doyle 1989; Doyle and Endress 2000).”
Phylogenetic analysis of Magnoliales and Myristicaceae based on multiple data sets: implications for character evolution (2003, background): “…grade (Hamby & Zimmer, 1992; Doyle et al ., 1994; Goremykin et al ., 1996; D. Soltis et al ., 1997; 2000; P. Soltis et al ., 1999; 2000; Mathews & Donoghue, 1999, 2000; Parkinson, Adams & Palmer, 1999; Qiu et al ., 1999, 2000, 2001; Barkman et al ., 2000; Borsch, 2000; Graham &…”
Morphological Phylogenetic Analysis of Living and Fossil Chloranthaceae (2004, background): “Sampling of additional taxa and analysis of multiple genes added the remaining ANITA lines to the basal grade (Soltis et al. 1997, 1999, 2000a, 2000b; Mathews and Donoghue 1999, 2000; Parkinson et al. 1999; Qiu et al. 1999, 2000; Barkman et al. 2000; Graham and Olmstead 2000; Zanis et al. 2002).”
Phylogeny of Aristolochiaceae based on parsimony, likelihood, and Bayesian analyses of trnL-trnF sequences (2004, background): “Identical topology with similar support levels and branch lengths for this position of Lactoris is found in the majority of single and combined gene analyses such as Chase et al. (1993), Mathews and Donoghue (2000) , Qiu et al. (2000), Savolainen et al. (2000), Soltis et al. (2000), Zanis et al. (2”
Development of COS genes as universally amplifiable markers for phylogenetic reconstructions of closely related plant species (2008, background): “Taking the number of different taxa (families and above) as a criterium, to date the closest approximations to universally amplifiable LCNG are provided by Rpb2 (Oxelman et al., 2004), GbssI (Mason-Gamer et al., 1998), and phytochrome genes (e.g., Mathews and Donoghue, 2000).”
Phylogenetic Analyses of Basal Angiosperms Based on Nine Plastid, Mitochondrial, and Nuclear Genes (2005, background): “…1992; Taylor and Hickey 1992; Chase et al. 1993; Qiu et al. 1993, 1999, 2000, 2001; Soltis et al. 1997, 2000; Nandi et al. 1998; Hoot et al. 1999; Mathews and Donoghue 1999, 2000; Parkinson et al. 1999; Renner 1999; Soltis et al. 1999a; Barkman et al. 2000; Doyle and Endress 2000; Graham and…”
Early evolution of angiosperm pollen as inferred from molecular and morphological phylogenetic analyses (2005, background): “…of single genes and combinations of genes have agreed on another ‘‘rooting’’ of the angiosperms (Chaw et al. 1997, 2000; Soltis et al. 1997, 1999, 2000; Mathews & Donoghue 1999, 2000; Parkinson et al. 1999, Qiu et al. 1999, 2000; Barkman et al. 2000, Graham & Olmstead 2000, Zanis et al. 2002,…”
Phylogeny of Nymphaea (Nymphaeaceae): Evidence from Substitutions and Microstructural Changes in the Chloroplast trnT‐trnF Region (2007, background): “An alternative hypothesis suggesting that a clade consisting of Amborella and Nymphaeales is sister to all other angiosperms (Barkman et al. 2000; Mathews and Donoghue 2000) has been favored by recent likelihood-based inferences (Leebens-Mack et al. 2005; Qiu et al. 2005).”
Phylogenetic analysis of Nymphaeales using fast-evolving and noncoding chloroplast markers (2007, background): “…Nymphaeales clade is most probably the second branch of the angiosperm tree, diverging after Amborella, and followed by Austrobaileyales (Parkinson, Adams & Palmer, 1999; Mathews & Donoghue, 2000; Soltis et al., 2000; Borsch et al., 2003; Hilu et al., 2003; Borsch et al., 2005; Qiu et al., 2005).”
Endressinia brasiliana, a Magnolialean Angiosperm from the Lower Cretaceous Crato Formation (Brazil) (2004, background): “…and molecular studies on basal lineages of angiosperms (Nandi et al. 1998; Soltis et al. 2000) group the Eumagnoliids into a stable clade, comprising the Magnoliales plus Laurales and Piperales plus Canellales, the latter with two families, Canellaceae and Winteraceae (Mathews and Donoghue 2000).”
Reconstructing the basal angiosperm phylogeny: evaluating information content of mitochondrial genes (2006, background): “In this topology, Amborella represents the first diverging lineage of all extant angiosperms, followed by Nymphaeales, Austrobaileyales, and Chloranthaceae sequentially.”
The Flowers in Extant Basal Angiosperms and Inferences on Ancestral Flowers (2001, background): “…extant angiosperms, followed by Nymphaeales and a clade comprising Austrobaileyacae, Trimeniaceae, and Illiciales; this basal grade was termed the ANITA grade (Mathews and Donoghue 1999, 2000; Qiu et al. 1999, 2000, 2001; Soltis et al. 1999, 2000a; Graham and Olmstead 2000; Graham et al. 2000).”