Two Sample Logo: a graphical representation of the differences between two sets of sequence alignments

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Seq2Logo: a method for construction and visualization of amino acid binding motifs and sequence profiles including sequence weighting, pseudo counts and two-sided representation of amino acid enrichment and depletion (2012, background): “Moreover, to the best of our knowledge, all public sequence logo servers, with the exception of the Icelogo (4) and two-sample logo (5) methods, focus on displaying the position-specific enrichment of amino acids, discarding the equally valuable information related to amino acid depletion.”
Log-odds sequence logos (2015, unknown): “A variety of alternative methods for calculating and presenting logos have since been described (Colaert et al., 2009; O’Shea et al., 2013; Schuster-B€ockler et al., 2004; Vacic et al., 2006; Workman et al., 2005).”
Comprehensive comparison of the interaction of the E2 master regulator with its cognate target DNA sites in 73 human papillomavirus types by sequence statistics (2007, methodology): “However, the most frequent bases differ at positions 4 and 5. We can better visualize this difference using a two sample logo (Figure 3A, bottom) ( 69 ).”
PhosphoSitePlus: a comprehensive resource for investigating the structure and function of experimentally determined post-translational modifications in man and mouse (2011, methodology): “The Frequency Change method is as described (39).”