The kink‐turn: a new RNA secondary structure motif

By D. Klein, T. Schmeing, P. Moore, T. Steitz. EMBO Journal, 2001

756 citations recorded by the source corpus.

View Paper: https://www.semanticscholar.org/paper/314683d43ef229478d2df9d750a18ea17d634780

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In Molecular Biology

Citations in the corpus

MOLPROBITY: structure validation and all-atom contact analysis for nucleic acids and their complexes (2004, background): “All-atom contacts for the interface between ribosomal protein L23 (on left, in peach) and a four-way junction region of the 23S RNA (on right, with white backbone and cyan bases), from the 1JJ2/rr0033 structure of the 50S ribosomal subunit from Haloarcula xmarismortui (15).”
Tools for the automatic identification and classification of RNA base pairs (2003, neutral): “4 (45) RR0056 30 S ribosomal subunit 3.”
The RCSB Protein Data Bank: redesigned web site and web services (2010, background): “…similar residues (yellow), other aligned residues (grey) and unaligned residues (white). structures that contain very large molecules [e.g. 1JJ2 (22)], structures that contain many models of relatively small macromolecules [e.g. 2HYN (23)] and structures that contain multiple models of large…”
FR3D: finding local and composite recurrent structural motifs in RNA 3D structures (2007, background): “Thus, none of the composite kink–turn motifs were identified in the original paper [26].”
The RCSB PDB “Molecule of the Month”: Inspiring a Molecular View of Biology (2015, background): “From top to bottom: DNA polymerase [16], ribosome [17,18], hemoglobin [19], ATP synthase [20,21], a G-protein bound to a G-protein-coupled receptor (GPCR) [22], and the collagen triple helix [23].”
Small nucleolar RNAs: an abundant group of noncoding RNAs with diverse cellular functions. (2002, neutral): “In rRNAs and the pol III-specific U6 spliceosomal snRNA, most, if not all, 2 -O-methylated nucleotides and pseudouridines are synthesized by snoRNPs (Kiss, 2001; Ganot et al., 1999).1Correspondence: tamas@ibcg.biotoul.fr brought to you by COREView metadata, citation and similar papers at core.ac.uk ”
3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures. (2003, methodology): “rRNA (3), and the multi-stranded complexes of DNA, e.”
Studies on the structure-function relationship of the bacterial ribosome (2004, background): “The tertiary structure of rRNA is built of a limited number of secondary structure modules including the A-minor, kink-turn, U-turn, S-turn, hookturn, and tetraloop motifs (Hermann and Patel 1999, Moore 1999, Klein et al. 2001, Nissen et al. 2001, Moore and Steitz 2003).”
3V: cavity, channel and cleft volume calculator and extractor (2010, background): “The two macromolecules shown are (A) lysozyme (30) and (B) the 50S ribosomal subunit (33).”