Computer visualization of three-dimensional image data using IMOD.

By James Kremer, David N. Mastronarde, J. Mcintosh. 1996

Subfields: 3D Vision & Pose, Computational Biology & Bioinformatics

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David N. Mastronarde

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Citations in the corpus

An Integrated Micro- and Macroarchitectural Analysis of the Drosophila Brain by Computer-Assisted Serial Section Electron Microscopy (2010, methodology): “IMOD is the current gold standard in EM software for image composition and processing.”
Automated electron microscope tomography using robust prediction of specimen movements. (2005, methodology): “This angle is obtained from the fiducial marker alignment (Lawrence, 1992) of a typical tilt series using the IMOD software (Kremer et al., 1996; Mastronarde, 1997).”
M. tuberculosis and M. leprae translocate from the phagolysosome to the cytosol in myeloid cells. (2007, methodology): “The reconstruction was made using weighted back projection using the IMOD software (Kremer et al., 1996).”
Microscopy Image Browser: A Platform for Segmentation and Analysis of Multidimensional Datasets (2016, methodology): “There are a number of both commercial (e.g., Amira and Imaris) and freeware image processing packages (e.g., ImageJ [3], Fiji [4], BioImageXD [5], IMOD [6], Ilastik [7], and 3D Slicer [8]) available.”
A contractile injection system stimulates tubeworm metamorphosis by translocating a proteinaceous effector (2019, unknown): “Tilt series were acquired using SerialEM (Mastronarde, 2005) and reconstructed and segmented using the IMOD program suite (Kremer et al., 1996).”
Visualizing lignin coalescence and migration through maize cell walls following thermochemical pretreatment (2008, methodology): “Tomograms were displayed and analyzed using the IMOD software package (Kremer et al., 1996).”