Modern homology modeling of G-protein coupled receptors: which structural template to use?
By Juan Carlos Mobarec, R. Sánchez, Marta Filizola. 2009
145 citations recorded by the source corpus.
Subfields: Cellular and Molecular Neuroscience, Molecular Biology
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In Cellular and Molecular Neuroscience
In Molecular Biology
- Lim Heo
- Michael Feig
- Jens Meiler
- B. Fredholm
- Thomas M. Frimurer
- Elizabeth Dong Nguyen
- Christoffer H Norn
- David Baker
Citations in the corpus
- Multi-State Modeling of G-protein Coupled Receptors at Experimental Accuracy (2021, methodology): “For example, GPCR models predicted using templates with sequence identities higher than 20%–40% were assumed to be confident.(24,33,34) Likewise, it may be used to infer the success of modeling prior to the active state modeling via”
- International Union of Basic and Clinical Pharmacology. LXXXI. Nomenclature and Classification of Adenosine Receptors—An Update (2011, background): “From a different perspective, Mobarec et al. (2009) concluded that based on sequence identity the currently available structures may only provide reasonable homology models for a small minority of class A GPCRs.”
- Assessment and Challenges of Ligand Docking into Comparative Models of G-Protein Coupled Receptors (2013, background): “…multiple models based on different templates provides a better opportunity to sample the correct conformation and this is leveraged here [12], the generation of a smaller but improved conformational receptor ensemble could benefit from using multiple template structures in a single model [45].”