Rational automatic search method for stable docking models of protein and ligand.
By M. Mizutani, N. Tomioka, A. Itai. 1994
Subfields: Computational Biology & Bioinformatics, Computational Chemistry & Drug Discovery
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In Computational Biology & Bioinformatics
- Glaucius Oliva
- Haim J. Wolfson
- Ruth Nussinov
- Shengyou Huang
- Xiaoqin Zou
- Adriano Defini Andricopulo
- L. Ferreira
- Gerhard Klebe
In Computational Chemistry & Drug Discovery
- Shengyou Huang
- Xiaoqin Zou
- Adriano Defini Andricopulo
- Glaucius Oliva
- Ricardo N Dos Santos
- L. Ferreira
- Gerhard Klebe
- Matthias Rarey
Citations in the corpus
- Molecular Docking and Structure-Based Drug Design Strategies (2015, methodology): “…eHiTS [28] AutoDock [34] FRED [30] Gold [35] Surflex-Dock [31] PRO_LEADS [44] DOCK [32] EADock [45] GLIDE [37] ICM [46] EUDOC [38] LigandFit [47] FlexX [39] Molegro Virtual Docker [48] Hammerhead [40] CDocker [49] Flog [41] GlamDock [50] SLIDE [42] PLANTS [51] ADAM [43] MolDock [52] MOE_Dock [53]”
- Protein-Protein and Protein-Ligand Docking (2013, methodology): “The most common docking programs include AutoDock [15], DOCK [9], FlexX [16], GOLD [17], ICM [18], ADAM [19], DARWIN [20], DIVALI [21], and DockVision [22].”
- Principles of docking: An overview of search algorithms and a guide to scoring functions (2002, background): “165 Small ligand-oriented docking schemes are either semiflex-ible 122,166–169 or flexible.”
- Towards the development of universal, fast and highly accurate docking/scoring methods: a long way to go (2008, background): “Metropolis allows for higher energy conformation to exist by allowing a temperature dependence (the higher the (Yamada and Itai, 1993; Mizutani et al ., 1994, 2006) www.immd.co.jp/en/product_2.html RBD Autodock 4.0 (Morris et al ., 1998; Osterberg et al ., 2002) autodock.scripps.edu/ GA CDOCKER (Wu…”
- Protein-ligand docking in the new millennium--a retrospective of 10 years in the field. (2013, unknown): “ADAM Japan 1994 [134]”
- A fast flexible docking method using an incremental construction algorithm. (1996, background): “Mizutani presents an algorithm which is based on a complete combinatorial search over all possible matches between hydrogen bond patterns in the ligand and receptor, respectively (Mizutani et al., 1994).”
- Advances and Challenges in Protein-Ligand Docking (2010, methodology): “DOCK [53], LUDI [54], FlexX [55], ADAM [56], and eHiTs [57] are example docking programs that use fragmentation methods.”