NEBcutter: a program to cleave DNA with restriction enzymes

By Tamas Vincze, J. Posfai, R. Roberts. Nucleic Acids Res., 2003

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Prey preference of the common vampire bat (Desmodus rotundus, Chiroptera) using molecular analysis (2015, methodology): “— DNA fragments of the 359-bp Cytb region available in the NCBI sequence database from D. rotundus and each of the prey species were used to check the cleavage sites of the restriction enzymes and to estimate the expected sizes of the fragments using the NEB Cutter 2.0 program (Vincze et al. 2003).”
Characterization of Neutrophilic Fe(II)-Oxidizing Bacteria Isolated from the Rhizosphere of Wetland Plants and Description of Ferritrophicum radicicola gen. nov. sp. nov., and Sideroxydans paludicola sp. nov. (2007, methodology): “php ) software ( Vincze et al. 2003 ) was used to generate in silico digest profiles for each of the 4 isolates, 1 for each of 4 four restriction enzymes used.”
Development of a codominant CAPS marker for allelic selection between canary yellow and red watermelon based on SNP in lycopene β-cyclase (LCYB) gene (2007, methodology): “Differential restriction sites between the two alleles were identified using NEBcutter V2.0 ( Vincze et al. 2003 ) based on the genomic DNA sequences of LCYB genes from canary yellow and red.”