A Correction to the Review Titled "Rules for Modeling Signal-Transduction Systems" by W. S. Hlavacek et al.

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Physicochemical modelling of cell signalling pathways (2006, background): “However, in many situations, including EGFR signalling, the consequences of ignoring species are unknown and it is hard to establish a rigorous basis for optimizing model granularit”
Efficient modeling, simulation and coarse-graining of biological complexity with NFsim (2011, background): “Combinatorial complexity arises frequently in biochemical pathways because molecules tend to interact in a multitude of distinct combination”
Quantitative and logic modelling of gene and molecular networks (2015, methodology): “Entity relationships are thus a perfect graphical representation for rule-based models (44,45).”
Rule-based modeling of biochemical systems with BioNetGen. (2009, methodology): “BNGL allows site-specific details of protein-protein interactions to be captured in models for the dynamics of these interactions in a systematic fashion, alleviating both nomenclature and reusability issues ( 8 ).”