MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0.

By Koichiro Tamura, Joel T. Dudley, Masatoshi Nei, Sudhir Kumar. Molecular biology and evolution, 2007

29,524 citations recorded by the source corpus.

Subfields: Genetics, Molecular Biology, Plant Science

View Paper: https://www.semanticscholar.org/paper/2d6f573c36c5e2153b65859fb080523fc4d842d0

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Citations in the corpus

Phosphate-solubilizing peanut associated bacteria: screening for plant growth-promoting activities (2010, methodology): “Phylogenetic and molecular evolutionary analyses were conducted using BioEdit (Hall 1999), MEGA version 4 (Tamura et al. 2007) and PHyML (Guindon and Gascuel 2003) software.”
Isolation and identification of two flavonoid-producing endophytic fungi from Ginkgo biloba L. (2010, methodology): “To construct the relevant phylogenetic tree, MEGA software was used (Tamura et al. 2007).”
Genetic diversity, structure and fruit trait associations in Greek sweet cherry cultivars using microsatellite based (SSR/ISSR) and morpho-physiological markers (2011, methodology): “The matrices of mutual coefficients of similarity calculated by FreeTree were converted to MEGA 4 v.4.1 software (Tamura et al. 2007) and resulting clusters were expressed as dendrograms.”
DNA bar-coding reveals source and patterns of Thaumastocoris peregrinus invasions in South Africa and South America (2010, methodology): “Phylogenetic and distance analyses were conducted using MEGA version 4 (Tamura et al. 2007).”
Fungal community associated with marine macroalgae from Antarctica (2010, neutral): “Phylogenetic relationships were estimated using the MEGA program Version 4.0 (Tamura et al. 2007).”
Genome-wide analysis of the auxin response factor (ARF) gene family in maize (Zea mays) (2011, methodology): “Phylogenetic trees for all complete ZmARF protein sequences were also constructed using MEGA v4.0 ( Tamura et al. 2007 ) by the neighbor-joining (NJ) method.”
Phylogeography and ecological niche modelling of the New Zealand stick insect Clitarchus hookeri (White) support survival in multiple coastal refugia (2010, methodology): “0 (Tamura et al., 2007) to search for the presence of unexpected stop codons that may indicate contamination by nuclear pseudogenes (Zhang & Hewitt, 1996).”
Molecular Phylogeny of Owls (Strigiformes) Inferred from DNA Sequences of the Mitochondrial Cytochrome b and the Nuclear RAG-1 gene (2009, methodology): “Basic statistics, variable and parsimony informative sites, and p-distances were calculated with MEGA version 4.0 (Tamura et al. 2007).”
The collision of the Indian plate with Asia: molecular evidence for its impact on the phylogeny of freshwater crabs (Brachyura: Potamidae) (2009, methodology): “The ME tree was constructed with the program mega4 (version 4.0; Tamura et al., 2007) with the gamma correction obtained from MrModeltest, the Kimura (1980) two-parameter model (CNI level = 2, initial tree = NJ, and maximum number of trees to retain = 1) and 2000 replicates by the interior-branch…”
Culturable bacteria associated with Antarctic lichens: affiliation and psychrotolerance (2009, methodology): “1997), then exported to MEGA4 (Tamura et al. 2007) and improved manually.”
Chlorella variabilis and Micractinium reisseri sp. nov. (Chlorellaceae, Trebouxiophyceae): Redescription of the endosymbiotic green algae of Paramecium bursaria (Peniculia, Oligohymenophorea) in the 120th year (2010, methodology): “Further bootstrap analyses (100 replicates each) were performed using the neighbor-joining method of Jukes and Cantor, minimum evolution of maximum composite likelihood with gamma parameter = 0.8, and maximum parsimony in MEGA version 4.1 (Tamura et al. 2007).”
Shark predation and tooth wear in a population of northeastern Pacific killer whales (2011, methodology): “Sequence analysis was carried out using MEGA4.”