Isolation with migration models for more than two populations.

By J. Hey. Molecular biology and evolution, 2010

822 citations recorded by the source corpus.

View Paper: https://www.semanticscholar.org/paper/2d3d3ffad7a228f07b6c3e3e06b850d078bafa91

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In Genetics

Citations in the corpus

Phylogeographic studies of plants in China: Advances in the past and directions in the future (2012, methodology): “For example, the isolation and migration (IM) model and the corresponding calculations can be extended to the multiple-loci data (Hey & Nielsen, 2004) and multiple populations (Hey & Nielsen, 2007; Hey, 2010; Choi & Hey, 2011).”
Assessing population structure in the face of isolation by distance: Are we neglecting the problem? (2018, methodology): “…allows the comparison of concurrent models and estimates demographic parameters using a full likelihood framework (Beerli & Palczewski, 2010; Hey, 2010), approximate Bayesian computation (Csilléry, Blum, Gaggiotti, & François, 2010), or allele frequency spectrum (Excoffier, Dupanloup,…”
Dsuite - fast D-statistics and related admixture evidence from VCF files (2020, methodology): “…methods based on detailed population genetic models, such as δ a δ i (Gutenkunst et al., 2009), fastsimcoal2 (Excoffier et al., 2013), or IMa2 (Hey, 2010) can be used to infer demographic history that includes events such as population size changes, population splits and joins, and migration.”
Molecular phylogenetics: principles and practice (2012, background): “Multi-locus sequence data can be used to estimate divergence times between closely related species and the sizes of both extant and extinct populations 117,118 to infer population demographic changes and to estimate migration patterns and rates 119,120 .”
Robust Demographic Inference from Genomic and SNP Data (2013, methodology): “Various methods have been proposed to estimate demography from genetic data, including full-likelihood methods [6–9], summary-statistics likelihood based methods [10,11], or different flavours of Approximate Bayesian Computation [12–16].”
After continents divide: comparative phylogeography of reef fishes from the Red Sea and Indian Ocean (2013, methodology): “We calculated the effects of time and gene flow on genetic divergence between populations using Bayesian coalescentbased estimation with IMa2 8.26.11 (Hey & Nielsen, 2007; Hey, 2010).”
More grist for the mill? Species delimitation in the genomic era and its implications for conservation (2019, background): “Fennessey et al. (2016), however, did not estimate population divergence times, only sequence divergence times, which, incidentally, can also be estimated with microsatellites (e.g. Hey 2010).”
Phylogeography and conservation of the bull shark (Carcharhinus leucas) inferred from mitochondrial and microsatellite DNA (2011, methodology): “To estimate historical genetically effective population sizes (NE), we performed a Bayesian estimation of H using the program IMa2 (version 02/22/2010, Hey 2010; Hey and Nielson 2007) run on the Computational Biology Service Unit computer cluster at Cornell University.”
The BPP program for species tree estimation and species delimitation (2015, background): “The MSC has been extended to account for migration between populations (Hey, 2010) and recombination along the sequence (Hobolth et al.”