A comprehensive phylogeny of birds (Aves) using targeted next-generation DNA sequencing

By R. Prum, Jacob S. Berv, A. Dornburg, D. Field, Jeffrey P. Townsend, E. Lemmon, Alan R. Lemmon. Nature, 2015

1,023 citations recorded by the source corpus.

Subfields: Molecular Biology, Paleontology

View Paper: https://www.semanticscholar.org/paper/291c7569bfd7ca682908786a2e57e4ae1aabe1fb

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Citations in the corpus

Evolution of lacewings and allied orders using anchored phylogenomics (Neuroptera, Megaloptera, Raphidioptera) (2018, methodology): “Extracted DNA was used to produce Illumina libraries following Lemmon et al. (2012) and Prum et al. (2015).”
Anchored hybrid enrichment provides new insights into the phylogeny and evolution of longhorned beetles (Cerambycidae) (2018, methodology): “…& Dong, 2016) or target enrichment (e.g. Faircloth et al., 2012; Lemmon et al., 2012; Smith et al., 2014; Brandley et al., 2015; Eytan et al., 2015; Prum et al., 2015; Hamilton et al., 2016; Young et al., 2016; Breinholt et al., 2017), to generate large-scale phylogenomic datasets for use in…”
Resolving the psyllid tree of life: phylogenomic analyses of the superfamily Psylloidea (Hemiptera) (2018, methodology): “After merging following Rokyta et al. (2012), the raw reads were trimmed, filtered and assembled into contigs following the methods described in Prum et al. (2015).”
Anchored Hybrid Enrichment-Based Phylogenomics of Leafhoppers and Treehoppers (Hemiptera: Cicadomorpha: Membracoidea) (2017, methodology): “Reads were then assembled following methods described by Prum et al. (2015) and Ruane et al. (2015), but using the following references: Philaenus spumarius, Ponana quadralaba, Pauropsalta sp. and Graphocephala fennahi.”
Owlflies are derived antlions: anchored phylogenomics supports a new phylogeny and classification of Myrmeleontidae (Neuroptera) (2018, methodology): “After grouping homologous consensus sequences obtained during the assembly process, putative orthologues were identified for each locus following Prum et al. (2015), which uses a neighbour joining-based clustering algorithm based on alignment-free pairwise sequence divergences.”