CircaDB: a database of mammalian circadian gene expression profiles
By Angel D. Pizarro, Katharina Hayer, Nicholas F. Lahens, John B. Hogenesch. Nucleic Acids Res., 2012
351 citations recorded by the source corpus.
CircaDB (http://circadb.org) is a new database of circadian transcriptional profiles from time course expression experiments from mice and humans. Each transcript’s expression was evaluated by three separate algorithms, JTK_Cycle, Lomb Scargle and DeLichtenberg. Users can query the gene annotations using simple and powerful full text search terms, restrict results to specific data sets and provide probability thresholds for each algorithm. Visualizations of the data are intuitive charts that convey profile information more effectively than a table of probabilities. The CircaDB web application is open source and available at http://github.com/itmat/circadb.
Subfields: Aging, Endocrine and Autonomic Systems, Plant Science
View Paper: https://www.semanticscholar.org/paper/260506ab7d0d08b1a94dc8b160e5032ca19d0169
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Citations in the corpus
- Circadian Clock NAD+ Cycle Drives Mitochondrial Oxidative Metabolism in Mice (2013, background): “S5A) (20), as well as phosphofructokinase 1 (Pfk1), a rate-limiting glycolytic enzyme (fig.”