CaspR: a web server for automated molecular replacement using homology modelling

By Jean-Baptiste Claude, Karsten Suhre, Cédric Notredame, Jean-Michel Claverie, Chantal Abergel. 2004

88 citations recorded by the source corpus.

Subfields: Materials Chemistry, Molecular Biology

How researchers see this paper

The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.

In Materials Chemistry

1. Ben M. Webb
2. Yang Zhang
3. Andrej Sali
4. Min-Yi Shen
5. David Eramian
6. Narayanan Eswar
7. Torsten Schwede
8. Jianlin Cheng

In Molecular Biology

1. Ben M. Webb
2. Yang Zhang
3. Andrej Sali
4. Min-Yi Shen
5. Torsten Schwede
6. David Eramian
7. Narayanan Eswar
8. Jianlin Cheng

Citations in the corpus

• I-TASSER-MR: automated molecular replacement for distant-homology proteins using iterative fragment assembly and progressive sequence truncation (2017, methodology): “combined T-COFFEE, MODELLER, AMoRe and CNS into a web server, CaspR, for MR using homology models (3).”
• Comparative Protein Structure Modeling Using MODELLER (2016, methodology): “Models with such high accuracy have been shown to be useful even for refining crystallographic structures by the method of molecular replacement (Howell et al., 1992; Baker and Sali, 2001; Jones, 2001; Claude et al., 2004; Schwarzenbacher et al., 2004).”
• Evaluating the usefulness of protein structure models for molecular replacement (2005, methodology): “For example, it has been shown that in some cases, screening for MR solutions with a large number of models might produce suitable solutions (Claude et al., 2004) and that modelling can be used to improve the initial model after initial MR solutions have been found (Collaborative Computational…”
• Comparative Protein Structure Modeling Using MODELLER (2016, methodology): “Models with such high accuracy have been shown to be useful even for refining crystallographic structures by the method of molecular replacement (Howell et al., 1992; Baker and Sali, 2001; Jones, 2001; Claude et al., 2004; Schwarzenbacher et al., 2004).”
• Comparative Protein Structure Modeling Using Modeller (2006, methodology): “Models with such high accuracy have been shown to be useful even for refining crystallographic structures by the method of molecular replacement (Howell et al., 1992; Baker and Sali, 2001; Jones, 2001; Claude et al., 2004; Schwarzenbacher et al., 2004).”
• Using iterative fragment assembly and progressive sequence truncation to facilitate phasing and crystal structure determination of distantly related proteins. (2016, methodology): “In addition, automated pipelines such as CaspR (Claude et al., 2004), MrBUMP (Keegan & Winn, 2008) and BALBES (Long et al., 2008) were created to use multiple homologous template search models in order to enhance the success rate of MR.”
• Assessment of CASP7 predictions in the high accuracy template‐based modeling category (2007, background): “10,12 We also wish to suggest that greater emphasis should be placed on the prediction of local and global model accuracy.”