Gene sequences useful for predicting relatedness of whole genomes in bacteria.

By D. R. Zeigler. International Journal of Systematic and Evolutionary Microbiology, 2003

338 citations recorded by the source corpus.

Subfields: Food Science, Molecular Biology, Plant Science

View Paper: https://www.semanticscholar.org/paper/20d89c3e53ae2c1bf72705f378bb5cd729a641f2

How researchers see this paper

The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.

In Food Science

1. Fabiano Thompson
2. Jean Swings
3. T. Iida

In Molecular Biology

1. Fabiano Thompson
2. Jean Swings
3. T. Iida

In Plant Science

1. Fabiano Thompson
2. Jean Swings
3. T. Iida

Citations in the corpus

• Re-evaluating prokaryotic species (2005, neutral): “Rapid and robust classification with MLSA could use a universal set of genes, which would allow for the hierarchical classification of all prokaryote”
• Genetic characterisation of Pectobacterium wasabiae causing soft rot disease of potato in New Zealand (2010, neutral): “In other studies, comparative analyses of 16S rDNA sequences from Pectobacterium have demonstrated that this gene only provides coarse resolution of phytopathogenic enterobacteria (Young and Park 2007) or that this gene may be relatively unrepresentative of the bacterial genome (Zeigler 2003).”
• Biochemical and genetical analysis reveal a new clade of biovar 3 Dickeya spp. strains isolated from potato in Europe (2009, neutral): “Although 16S rDNA sequence analysis is commonly used for the identification of bacterial species and phylogenetic studies, this gene was found to have a relatively poor ability to predict genome relatedness at (sub)genus level (Zeigler 2003).”
• Biodiversity of Vibrios (2004, methodology): “Zeigler (448) examined the whole-genome sequences of 49 bacterial species from different phyla, including Bacillus spp.”
• Identifying and Characterizing Bacteria in an Era of Genomics and Proteomics (2008, neutral): “A few examples include the gyrase B subunit (gyrB); the alpha and beta subunits of RNA polymerase (rpoA and rpoB); and recA, a gene encoding for an enzyme important in DNA repair; there are a host of others (Zeigler 2003).”