The basic helix-loop-helix transcription factor family in plants: a genome-wide study of protein structure and functional diversity.

By Marc A Heim, M. Jakoby, Martin Werber, Cathie Martin, Bernd Weisshaar, Paul Bailey. Molecular biology and evolution, 2003

993 citations recorded by the source corpus.

Subfields: Molecular Biology, Plant Science

View Paper: https://www.semanticscholar.org/paper/1f3740192a0a0d28a16a77e47f563f8135ccc3bf

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Citations in the corpus

Jasmonate Biosynthesis, Perception and Function in Plant Development and Stress Responses (2013, background): “MYC2 is a member of the subgroup IIIe, along with MYC3 (At5g46760), MYC4 (At4g17880), and MYC5 (At5g46830) (Heim et al., 2003).”
Light-regulated plant growth and development. (2010, background): “The PIFs are part of a 15-member clade of bHLHs, many of which have been shown to act in light-regulated mor phogenesis (Castillon et al., 2007; Heim et al., 2003; Toledo-Ortiz et al., 2003).”
The JAZ Proteins: A Crucial Interface in the Jasmonate Signaling Cascade (2011, background): “All three MYC proteins belong to group IIIe of the bHLH family (Heim et al., 2003), in which at least five different protein domains have been identified (Figure 2B).”
Retrotransposons Control Fruit-Specific, Cold-Dependent Accumulation of Anthocyanins in Blood Oranges[W][OA] (2012, background): “The Ruby cDNA encodes a 262–amino acid protein containing an R2R3 Myb domain with a signature motif for interaction with bHLH proteins from the clade 3f (DLX2RX3LX6LX3R; Heim et al., 2003; Zimmermann et al., 2004; Lin-Wang et al., 2010; Figure 2A).”
Comprehensive identification of Arabidopsis thaliana MYB transcription factors interacting with R/B-like BHLH proteins. (2004, background): “R/B-like BHLH proteins interact with 1R MYB proteins To identify further proteins that interact with R/B-like AtBHLH factors, EGL3, TT8 and AtBHLH012 were used as bait proteins to screen three different activation domain-fused A. thaliana cDNA libraries in the yeast two-hybrid system.”
Comprehending crystalline β-carotene accumulation by comparing engineered cell models and the natural carotenoid-rich system of citrus (2011, neutral): “*, Amino acid contacts with nucleotide bases; filled triangle, amino acid contacts with DNA backbone;?, non-polar residues in protein-protein interactions; X, consensus sequence (Heim et al., 2003).”
ABA-mediated transcriptional regulation in response to osmotic stress in plants (2011, neutral): “1997), AtbHLH006 (Heim et al. 2003), and ZBF1 (Yadav et al.”
Red colouration in apple fruit is due to the activity of the MYB transcription factor, MdMYB10 (2007, background): “(c) N-terminus of the same bHLH subset showing regions (boxes 11, 18 and 13) conserved within the bHLH IIIf clade (according to Heim et al., 2003).”
Evolutionary and comparative analysis of MYB and bHLH plant transcription factors. (2011, background): “Outside the bHLH domain, despite low sequence conservation (Heim et al., 2003; Li et al., 2006), 28–50 additional conserved regions or motifs were identified, several of which were probably present before the invasion of land by plants, as evidenced by the presence of at least four of them in the…”
The Essential Basic Helix-Loop-Helix Protein FIT1 Is Required for the Iron Deficiency Response (2004, background): “Identification of FIT1 Loss-of-Function Mutants The FIT1 locus identifier is At2g28160 and was named AtbHLH029 as reported (Heim et al., 2003).”
The Regulation of Flavonoid Biosynthesis (2006, background): “Similar to the R2R3-MYB family, the plant bHLH family is very large, with more than 150 members in Arabidopsis (Atchley et al., 2000; Buck and Atchley, 2003; Heim et al., 2003; Toledo-Ortiz et al., 2003).”
TT2, TT8, and TTG1 synergistically specify the expression of BANYULS and proanthocyanidin biosynthesis in Arabidopsis thaliana. (2004, background): “Moreover, these interactions may be involved, at least partially, in some of the functional specificity displayed by members of these two major plant TF gene families ( Heim et al., 2003; Riechmann et al., 2000; Stracke et al., 2001).”
Genome-Wide Analysis of the ERF Gene Family in Arabidopsis and Rice[W] (2006, background): “This numbering system provides a unique identifier for each ERF gene as pro- posed for the MYB, WRKY, bZIP, and bHLH transcription factors in Arabidopsis (Kranz et al., 1998; Romero et al., 1998; Eulgem et al., 2000; Jakoby et al., 2002; Heim et al., 2003).”