Exploring the extremes of sequence/structure space with ensemble fold recognition in the program Phyre

By Riccardo Bennett-Lovsey, Alex D Herbert, Michael J.E. Sternberg, Lawrence A. Kelley. Proteins: Structure, Function, and Bioinformatics, 2008

454 citations recorded by the source corpus.

Subfields: Molecular Biology

View Paper: https://www.semanticscholar.org/paper/1f0701ecf599ed14edd75de3f5420bf5f08d0a18

How researchers see this paper

The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.

In Molecular Biology

1. Michael J.E. Sternberg
2. Lawrence A. Kelley
3. Grant M. Shoffner
4. Yaoqing Shen
5. Ruchira S. Datta
6. Kimmen Sjölander
7. Andrej Sali
8. Ben M. Webb

Citations in the corpus

• Protein structure prediction on the Web: a case study using the Phyre server (2009, methodology): “However, by focusing on a step-by-step procedure for one system, in particular, the recently developed Phyr”
• Ortholog identification in the presence of domain architecture rearrangement (2011, methodology): “In the first step, functional or structural domains are identified for a protein of interest; functional domains are typically identified using Pfam [60] while structural domains can be identified using protein structure prediction methods such as PHYRE [61].”