Ensembl 2013
By Paul Flicek, Ikhlak Ahmed, M. Amode, Daniel Barrell, Kathryn M Beal, Simon Brent, D. Carvalho-Silva, P. Clapham, Guy Coates, S. Fairley and 45 more. Nucleic Acids Res., 2012
685 citations recorded by the source corpus.
The Ensembl project (http://www.ensembl.org) provides genome information for sequenced chordate genomes with a particular focus on human, mouse, zebrafish and rat. Our resources include evidenced-based gene sets for all supported species; large-scale whole genome multiple species alignments across vertebrates and clade-specific alignments for eutherian mammals, primates, birds and fish; variation data resources for 17 species and regulation annotations based on ENCODE and other data sets. Ensembl data are accessible through the genome browser at http://www.ensembl.org and through other tools and programmatic interfaces.
Subfields: Molecular Biology
View Paper: https://www.semanticscholar.org/paper/1ef838a1cdc55842e41a05bb536531e64338a569
How researchers see this paper
The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.
In Molecular Biology
- Daniel R. Zerbino
- Sune Frankild
- S. Searle
- Stephen Fitzgerald
- Janos X. Binder
- Kalliopi Tsafou
- Paul Flicek
- Albert Pallejà
Citations in the corpus
- Ensembl 2014 (2013, background): “Since our last report (11), we have added two new species with full gene annotation and comparative genomics support: duck ( Anas platyrhynchos ) (12) and collared flycatcher ( Ficedula albicollis ) and one new species with variation support: gibbon.”
- pVAC-Seq: A genome-guided in silico approach to identifying tumor neoantigens (2016, methodology): “This annotator leverages the functionality of the Ensembl database [36] and Variant Effect Predictor (VEP) [37].”
- DISEASES: Text mining and data integration of disease–gene associations (2014, background): “1 [23], which integrates names from Ensembl [37], UniProtKB [9], and HGNC [8].”
- The Human Gene Mutation Database: towards a comprehensive repository of inherited mutation data for medical research, genetic diagnosis and next-generation sequencing studies (2017, neutral): “…and HGMD identifiers, has been made available via academic data exchange programmes to the European Bioinformatics Institute (EBI)/Ensembl (Flicek et al. 2013) and the University of California, Santa Cruz (UCSC) (Meyer et al. 2013) and may be viewed in these projects’ respective genome…”