Faculty Opinions recommendation of Simultaneous epitope and transcriptome measurement in single cells.

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The Human Tumor Atlas Network: Charting Tumor Transitions across Space and Time at Single-Cell Resolution (2020, positive): “(3) HTAN centers will also quantify proteins from single cells by using cellular indexing of transcriptomes and epitopes by sequencing (CITE-seq) (Stoeckius et al., 2017) to confirm and complement the sc/snRNA-seq data.”
Spatiotemporal transcriptomic atlas of mouse organogenesis using DNA nanoball patterned arrays (2021, background): “Similarly, oligonucleotide-labeled antibodies (Stoeckius et al., 2017) could be incorporated into the DNB for simultaneous protein detection of surface markers, which would be useful for easier identiﬁcation of speciﬁc small cell types ( e.g. , inﬁltrating immune cells).”
Differential abundance testing on single-cell data using K-nearest neighbour graphs (2021, background): “Milo might also be applicable to single-cell assays other than scRNA-seq, including multi-omic assays 35–39 .”