Advances in functional and structural MR image analysis and implementation as FSL.

By Stephen M. Smith, Mark Jenkinson, Mark William Woolrich, Christian F. Beckmann, Timothy Edward John Behrens, Heidi Johansen-Berg, Peter R. Bannister, M. De Luca, Ivana Drobnjak, D. Flitney and 7 more. 2004

14,052 citations recorded by the source corpus.

Subfields: Cognitive Neuroscience, Radiology, Nuclear Medicine and Imaging

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Citations in the corpus

Interpreting support vector machine models for multivariate group wise analysis in neuroimaging (2015, neutral): “It remains one of the most prolific methods used for fMRI data analysis Xu et al. (2009) McKeown and Sejnowski (1998) Smith et al. (2004) Svenséen et al. (2002) Stone et al. (2002) Perlbarg et al. (2007).”
The UNC/UMN Baby Connectome Project (BCP): An Overview of the Study Design and Protocol Development (2018, neutral): “[PubMed: 24229557] Jenkinson M, Beckmann CF, Behrens TEJ, Woolrich MW, Smith SM. FSL. Neuroimage.”
Large-scale evaluation of ANTs and FreeSurfer cortical thickness measurements (2014, methodology): “, 1999, 2002, 2004)which owes its popularity to public availability, excellent documentation, good performance, and integration with other toolkits, such as the extensive FMRIB software library (Smith et al., 2004).”
Anatomically-constrained tractography: Improved diffusion MRI streamlines tractography through effective use of anatomical information (2012, methodology): “For the results presented here, we utilised tools from the FMRIB Software Library (FSL) (Smith et al., 2004); firstly the Brain Extraction Tool (BET) (Smith, 2002) to remove non-brain tissue from the image, followed by the FMRIB Automated Segmentation Tool (FAST) (Zhang et al.”
DIFFUSION-WEIGHTED IMAGING TRACTOGRAPHY-BASED PARCELLATION OF THE HUMAN PARIETAL CORTEX AND COMPARISON WITH HUMAN AND MACAQUE RESTING STATE FUNCTIONAL CONNECTIVITY (2011, methodology): “In contrast, the human parietal cortex differs in the strength of its interactions between the central inferior parietal lobule region and the anterior prefrontal cortex.”
Visual inspection of independent components: Defining a procedure for artifact removal from fMRI data (2010, methodology): “uk/fsl) (Smith et al., 2004; Woolrich et al., 2009), involving non-brain removal using BET (Smith, 2002); motion correction with MCFLIRT (Jenkinson et al.”
Age-specific CT and MRI templates for spatial normalization (2012, methodology): “…of the middle axial, coronal and sagittal slice for an individual with the Montreal Neuroimaging Institute brain mask (as distributed with FSL, Smith et al., 2004) overlayed as a translucent red; the right column showed a similar image from the same individual except using a different…”
Visualization of image data from cells to organisms (2010, neutral): “3f) in diffusion imaging are provided by several of the software packages listed in Table 2 (for example, DTIStudio, TrakVis, ITK, 3D Slicer, MedINRIA, TractoR and FSL).”
Incorporating outlier detection and replacement into a non-parametric framework for movement and distortion correction of diffusion MR images (2016, neutral): “uk/fsl/fslwiki/EDDY) in FSL (see Smith et al. (2004) and http://fsl.”
Diffusion tensor imaging with tract-based spatial statistics reveals local white matter abnormalities in preterm infants (2007, methodology): “Images were brainextracted using BET (Smith, 2002), part of the FSL package (Smith et al., 2004).”
Anatomically related grey and white matter abnormalities in adolescent-onset schizophrenia. (2007, methodology): “(average of the second and third eigenvalues) maps were generated using DTIFit within the FMRIB Diffusion Toolbox (part of FSL; Smith et al., 2004).”
ICA-AROMA: A robust ICA-based strategy for removing motion artifacts from fMRI data (2015, positive): “…data preprocessing Preprocessing of the training setwas carried out using tools from the FMRIB Software Library (FSL; http://www.fmrib.ox.ac.uk/fsl; Smith et al. (2004), Woolrich et al. (2009), Jenkinson et al. (2012)) and involved (1) removal of the first five volumes to allow for signal…”
Assessing the effects of age on long white matter tracts using diffusion tensor tractography (2009, methodology): “In order to validate our tractography results a follow-up voxelwise analysis was performed using Tract-Based Spatial Statistics (TBSS; Smith et al., 2006) module of FSL (Smith et al., 2004).”