Bayesian haplotype inference for multiple linked single-nucleotide polymorphisms.

By Tianhua Niu, Zhaohui S. Qin, Xiping Xu, Jun S. Liu. American Journal of Human Genetics, 2002

702 citations recorded by the source corpus.

View Paper: https://www.semanticscholar.org/paper/1a125691fed9ad323b760b0bd3bfd40be8f9bd08

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In Genetics

In Molecular Biology

Citations in the corpus

Selecting additional tag SNPs for tolerating missing data in genotyping (2005, unknown): “Numerous methods have been developed to infer haplotypes from genotype data [12,14,15].”
A comparison of phasing algorithms for trios and unrelated individuals. (2006, methodology): “2002), Bayesian approaches based on conjugate priors (Lin et al. 2002, 2004b; Niu et al. 2002) and on priors from population genetics (Stephens et al.”
Accounting for decay of linkage disequilibrium in haplotype inference and missing-data imputation. (2005, unknown): “Stephens et al. 2001; Niu et al. 2002 Arlequin 3.0a (ELB) Bayesian method.”
Nuclear DNA analyses in genetic studies of populations: practice, problems and prospects (2003, methodology): “Niu et al. (2002) developed a novel Bayesian algorithm based on a Monte Carlo approach (referred to as the ‘haplotyper method’ after the name of their computer program, which is available at the following website: http://www.people.fas.harvard.edu/∼ junliu/Haplo/ docMain.htm). haplotyper…”
A comparison of bayesian methods for haplotype reconstruction from population genotype data. (2003, methodology): “We note that the main contribution of Niu et al. (2002)—the introduction of computational strategies to greatly reduce running times—can also be applied to the other algorithms, and we describe a new version of PHASE that exploits these strategies.”
Likelihood-Based Inference on Haplotype Effects in Genetic Association Studies (2006, methodology): “When the number of SNPs is large, the partition–ligation method of Niu et al. (2002) and Qin et al. (2002) and other modifications potentially can be adapted to reduce the computational burden.”