Approximate likelihood methods for estimating local recombination rates

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Modeling linkage disequilibrium and identifying recombination hotspots using single-nucleotide polymorphism data. (2003, methodology): “…methods of Clark, A. G., K. M. Weiss, D. A. Nickerson, S. L. Taylor, A. Buchanan et al., 1998 Haplotype structure and population ge-Hudson (2001) and Fearnhead and Donnelly (2002). netics inferences from nucleotide-sequence variation in human(While some other methods based on summaries of the…”
Probability Models for DNA Sequence Evolution (2002, background): “Griffiths and Marjoram (1996), Kuhner, Yamata, and Felsenstein (2000), Nielsen (2000), and Fearnhead and Donnelly (2001) developed estimators of ρ based on likelihood methods.”
A note on composite likelihood inference and model selection (2005, methodology): “…statistics (Besag 1974, Vecchia 1988, Hjort & Omre 1994, Heagerty & Lele 1998, Nott & Rydén 1999), multivariate survival analysis (Parner 2001), generalized linear mixed models (Renard, Molenberghs & Geys 2004), frailty models (Henderson & Shimakura 2003), genetics (Fearnhead & Donnelly 2002).”
ISSUES AND STRATEGIES IN THE SELECTION OF COMPOSITE LIKELIHOODS (2011, background): “There are also many uses in the complex likelihoods of genomic data (e.g., Devlin, Risch, and Roeder (1996); Fearnhead and Donnelly (2002); Engler et al. (2006)).”