ProtTest 3: fast selection of best-fit models of protein evolution

By Diego Darriba, Guillermo L. Taboada, Ramón Doallo, David Posada. Bioinform., 2011

795 citations recorded by the source corpus.

Summary We have implemented a High Performance Computing (HPC) version of ProtTest (Abascal et al., 2007) that can be executed in parallel in multi-core desktops and clusters. This version, called ProtTest 3, includes new features and extended capabilities. Availability ProtTest 3 source code and binaries are freely available under GNU license for download from http://darwin.uvigo.es/software/prottest3, linked to a Mercurial repository at Bitbucket (https://bitbucket.org/).

Subfields: Genetics, Molecular Biology

View Paper: https://www.semanticscholar.org/paper/10374ecf564306f0b87761056213d36b2ada75a6

Citations in the corpus

• W-IQ-TREE: a fast online phylogenetic tool for maximum likelihood analysis (2016, neutral): “W-IQ-TREE supports a ‘standard’ model selection procedure like jModelTest (18) and ProtTest (19)”
• Ultrafast Approximation for Phylogenetic Bootstrap (2013, neutral): “For the remaining 6,222 DNA and 6,182 protein alignments, we selected the best-fit models with the Bayesian information criterion using ModelTest (Posada and Crandall 1998) and ProtTest (Darriba et al. 2011), respectively.”