PDBsum additions

By Tjaart A. P. de Beer, Karel Berka, Janet M. Thornton, Roman A. Laskowski. 2013

277 citations recorded by the source corpus.

PDBsum, http://www.ebi.ac.uk/pdbsum, is a website providing numerous pictorial analyses of each entry in the Protein Data Bank. It portrays the structural features of all proteins, DNA and ligands in the entry, as well as depicting the interactions between them. The latest features, described here, include annotation of human protein sequences with their naturally occurring amino acid variants, dynamic graphs showing the relationships between related protein domain architectures, analyses of ligand binding clusters across different experimental determinations of the same protein, analyses of tunnels in proteins and new search options.

Subfields: Genetics, Molecular Biology

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Citations in the corpus

• Structure-Based Prototype Peptides Targeting the Pseudomonas aeruginosa Type VI Secretion System Effector as a Novel Antibacterial Strategy (2017, methodology): “Details of the TplE “L” peptide interaction with TplEi involves two salt bridges, eight hydrogen bonds and 147 non-bonded contacts through PDBsum analysis (de Beer et al., 2014) (Figures S2A,B).”