TarBase: A comprehensive database of experimentally supported animal microRNA targets.

By Praveen Sethupathy, Benoit Corda, Artemis G. Hatzigeorgiou. RNA: A publication of the RNA Society, 2005

731 citations recorded by the source corpus.

Subfields: Cancer Research, Molecular Biology

View Paper: https://www.semanticscholar.org/paper/0d7af87410dbca4c48b32179efc6828bad7d9015

How researchers see this paper

The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.

In Cancer Research

1. David P. Bartel
2. Artemis G. Hatzigeorgiou
3. Eric C. Lai
4. Phillip D. Zamore
5. Alexander Stark
6. Sam Griffiths-Jones
7. Olivier Voinnet
8. Praveen Sethupathy

In Molecular Biology

1. David P. Bartel
2. Manolis Kellis
3. Alexander Stark
4. Artemis G. Hatzigeorgiou
5. Olivier Voinnet
6. Phillip D. Zamore
7. Gregory J. Hannon
8. Eric C. Lai

Citations in the corpus

• miRBase: tools for microRNA genomics (2007, background): “In addition, links are provided to other target prediction sites and algorithms, and to the TarBase database of experimentally supported targets (22).”
• RNAhybrid: microRNA target prediction easy, fast and flexible (2006, background): “In stark contrast is the current number of experimentally validated targets, which according to the Diana TarBase is 55 for human (7).”
• RegNetwork: an integrated database of transcriptional and post-transcriptional regulatory networks in human and mouse (2015, background): “For post-transcriptional regulations, the experimentally validated ‘miRNA–gene’ pairs in human and mouse from miRTarBase (33), TarBase (37) and miRecords (32) are directly deposited in RegNetwork.”
• TarBase 6.0: capturing the exponential growth of miRNA targets with experimental support (2011, background): “0 (9), the first database for experimental supported miRNA targets was created to assist for the design of more robust prediction algorithms.”
• The database of experimentally supported targets: a functional update of TarBase (2008, background): “The need for a systematic documentation of such experimentally supported targets was covered by the first version of TarBase (9).”
• A guide through present computational approaches for the identification of mammalian microRNA targets (2006, background): “uk/sequences/ ) now contains over 450 mammalian entries, and TarBas”
• Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures (2007, background): “7c): 76% of motif instances in direct CrebA targets and 90% of motif instances in experimentally supported miRNA targets 104,110 were recovered at 60% confidence.”