Sea Anemone Genome Reveals Ancestral Eumetazoan Gene Repertoire and Genomic Organization

By Nicholas H. Putnam, M. Srivastava, U. Hellsten, B. Dirks, Jarrod Chapman, A. Salamov, A. Terry, H. Shapiro, E. Lindquist, Vladimir V. Kapitonov and 9 more. Science, 2007

1,549 citations recorded by the source corpus.

Subfields: Ecology, Global and Planetary Change, Paleontology

View Paper: https://www.semanticscholar.org/paper/0b61b3a2a55b156bb026a4c83d26d9b95c5af753

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Citations in the corpus

Animal Phylogeny and Its Evolutionary Implications (2014, background): “The sequencing of the first cnidarian genome, that ofNematostella vectensis (Putnam et al. 2007), radically altered this belief.”
Thermal and pCO2 Stress Elicit Divergent Transcriptomic Responses in a Resilient Coral (2016, methodology): “…2014) Symbiodinium and cnidarian transcriptomes and genomes were obtained from public databases and assembled into four distinct databases (Table 3; Putnam et al., 2007; Zhang et al., 2007; Shinzato et al., 2011; Bayer et al., 2012; Ladner and Palumbi, 2012; Lehnert et al., 2012; Moya et al.,…”
Phylogenomics provides a robust topology of the major cnidarian lineages and insights on the origins of key organismal traits (2018, positive): “0 genome release [48] using BLAST [110].”
Cell Biology of Cnidarian-Dinoflagellate Symbiosis (2012, background): “The publishing of the nonsymbiotic cnidarian genome sequences for the anemone Nematostella vectensis (292) and the hydroid Hydra magnipapillata (46) and of the symbiotic cnidarian genome sequence for the scleractinian coral Acropora digitifera (328), along with numerous other genomic and transcripto”
Evolution by gene loss (2016, background): “In the field of translational medicine, a gene loss database could help in improving functional connectivity between model organisms and human genomes by distinguishing orthologous from paralogous genes in the setting of reciprocal gene loss(175) (4) and could also help in the discovery of animals t”
Trio’s Rho-specific GEF domain is the missing Gαq effector in C. elegans (2007, background): “Since the secreted ACh that accumulates in the presence of aldicarb is toxic, mutations that decrease or increase the rate of ACh secretion confer resistance or hypersensitivity to aldicarb, respectively (Rand and Nonet 1997).”
The Amphimedon queenslandica genome and the evolution of animal complexity (2010, positive): “for 84% of the introns inferred for the metazoan ancestor, comparable to the 76% and 88% retention in human and sea anemone, respectively.(22,23) The organization of genes shows conserved synteny (i.”