Multivariate Analysis of Ecological Data

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Beetle Responses to Habitat Fragmentation Depend on Ecological Traits, Habitat Condition, and Remnant Size (2005, methodology): “In PC-Ord (McCune & Mefford 1999), we produced a Bray and Curtis (1957) distance matrix that included all beetle species.”
Species composition and structure of regenerated and remnant forest patches within an urban landscape (2002, methodology): “A Ward clustering technique, based on relative Euclidean distances (McCune and Mefford, 1999), used species importance values to identify community types.”
Communities of wood‐inhabiting bryophytes and fungi on dead beech logs in Europe – reflecting substrate quality or shaped by climate and forest conditions? (2014, methodology): “The relative importance of the three groups of explanatory variables (substrate, climate and soil and forest condition; Table 2) on species composition in both organism groups were analysed by variation partitioning (Legendre & Legendre, 1998) using canonical correspondence analysis (CCA; Lep s & Sm”
Dissecting a biodiversity hotspot: The importance of environmentally marginal habitats in the Atlantic Forest Domain of South America (2017, background): “…exclusion of 300 singletons (species found at a single site), as they commonly increase the noise in most analyses without contributing information (Lepš & Šmilauer, 2003); (2) the Hellinger transformation of the binary presence/absence data (Legendre & Gallagher, 2001), which reduces the effect…”