JoinMap® 4, Software for the calculation of genetic linkage maps in experimental populations

By J. Ooijen, JW van 't Verlaat, J. Tol, J. Dalén, J. Buren, J. M. Meer, J. V. Krieken, J. Kessel, O. Van, Roeland E. Voorrips and 1 more. 2006

2,099 citations recorded by the source corpus.

View Paper: https://www.semanticscholar.org/paper/09c9efc7e07ccf69e96be082ab25bd9bb5536246

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Citations in the corpus

Stacks: Building and Genotyping Loci De Novo From Short-Read Sequences (2011, methodology): “We executed the Stacks pipeline with a stack-depth parameter of three and a within-individual distance parameter of two and constructed a linkage map using JoinMap (Van Ooijen 2006).”
An integrated DArT-SSR linkage map of durum wheat (2008, unknown): “The same data matrix used to construct the integrated SSR-DArT durum wheat linkage map was also utilised for segregation distortion analysis by means of JoinMap v4 (van Ooijen 2006).”
Linkage Maps of Wheat Stripe Rust Resistance Genes Yr5 and Yr15 for Use in Marker-Assisted Selection (2009, methodology): “Linkage mapping was performed with JoinMap 3.0 (Van Ooijen, 2006) utilizing Haldane’s mapping function.”
Gene Pyramiding for Sustainable Crop Improvement against Biotic and Abiotic Stresses (2020, background): “It aims at accumulating several resistance genes with known effect on a trait of target and confers durable resistance against different stresses [88], and became possible with recent advances in molecular markers techniques [115-117].”
Linkage Map Construction and Quantitative Trait Locus Analysis of Agronomic and Fiber Quality Traits in Cotton (2014, methodology): “We used 499 SSR loci detected by 459 SSR primer pairs and 491 SNP marker loci to construct a linkage map with JoinMap version 4.0 sotware (van Ooijen, 2006).”
Software for the mapping of quantitative trait loci in experimental populations (2004, methodology): “The map must be precalculated with computer software for genetic linkage mapping, such as JoinMap® (Van Ooijen, 2006) or MAPMAKER (Lander et al, 1987).”
SNP-Based Genetic Linkage Map of Soybean Using the SoySNP6K Illumina Infinium BeadChip Genotyping Array (2013, methodology): “The SNP-based map was constructed in several steps using JoinMap 4 (Kyazma BV, Wageningen, Netherlands; Van Ooijen, 2006).”
High density SNP mapping and QTL analysis for fruit quality characteristics in peach (Prunus persica L.) (2012, methodology): “(note: map integration is not straightforward if both populations do not have all loci in common (JoinMap®4 Manual (Van Ooijen and Voorrips 2001).”
Construction of a high density linkage map and its application in the identification of QTLs for soluble sugar and organic acid components in apple (2015, methodology): “QTL analysis was performed with the MapQTL 5.0 software (Van Ooijen 2006).”
An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment (2009, methodology): “JoinMap 4 (Van Ooijen, 2006) was used for map construction.”
QTL analysis of fruit quality traits in two peach intraspecific populations and importance of maturity date pleiotropic effect (2011, unknown): “Markers genotyped for a given population were selected, when possible, on the basis of their position on the available Prunus linkage maps [Genomic Database for Rosaceae (GDR), http://www.bioinfo.wsu.edu/gdr/cmap/ index.php] in order to cover most of the genome, with an average distance between mark”