A high-resolution map of transcription in the yeast genome.

By L. David, Wolfgang Huber, Marina Granovskaia, J. Toedling, C. Palm, L. Bofkin, Ted Jones, Ronald W. Davis, Lars M. Steinmetz. Proceedings of the National Academy of Sciences of the United States of America, 2006

742 citations recorded by the source corpus.

Subfields: Molecular Biology

View Paper: https://www.semanticscholar.org/paper/073f20476397c6a11ffe331bf5a5d3f7a9a55bdb

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Citations in the corpus

Diverse RNA-Binding Proteins Interact with Functionally Related Sets of RNAs, Suggesting an Extensive Regulatory System (2008, background): “For mRNAs for which there are reliable measurements for untranslated sequence lengths (SUN4, DSE2, SCW4, CLN2, PUF2, PMA1, SUR7, and HHT1) [63], we added 50 bases onto the estimated 59-UTR and 39-UTR lengths, because the estimated UTR lengths are likely conservative.”
A barrier nucleosome model for statistical positioning of nucleosomes throughout the yeast genome. (2008, methodology): “The terminal nucleosome was defined as the closest upstream nucleosome to the transcript termination site (TTS) (David et al. 2006) for transcripts of at least 1.3 kb. Terminal nucleosomes that were within 500 bp of the TTS and defined by >6 reads (to achieve a statistically robust fuzziness value)…”
Bidirectional promoters generate pervasive transcription in yeast (2009, methodology): “The manually curated transcripts were overlapped with the genome annotation features and classified as: (1) SUTs, if they did not overlap with existing annotation; (2) ORF-Ts, if they overlapped with a verified or uncharacterized ORF; or (3) other.”
A high-resolution atlas of nucleosome occupancy in yeast (2007, background): “By combining these data with global studies of transcriptio”