How to do BPA, really

By Daniel R. Brooks, Marco G. P. Van Veller, D. A. Mclennan. 2001

156 citations recorded by the source corpus.

Subfields: Nature and Landscape Conservation, Paleontology

View Paper: https://www.semanticscholar.org/paper/06e5faf74c759560950a8eba2ea014a01a9081b9

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In Nature and Landscape Conservation

In Paleontology

Citations in the corpus

FAUNISTIC SIMILARITY AND HISTORIC BIOGEOGRAPHY OF THE HARVESTMEN OF SOUTHERN AND SOUTHEASTERN ATLANTIC RAIN FOREST OF BRAZIL (2005, methodology): “In this analysis each terminal of the species’ cladograms was replaced by the species’ areas of distribution; terminals and nodes were transformed into a binary matrix (Brooks et al. 2001).”
A historical biogeographical protocol for studying biotic diversification by taxon pulses (2005, unknown): “At present, secondary BPA (Brooks, 1990; see also Brooks et al., 2001; Brooks & McLennan, 2002) is the only available method that attempts to depict the full range of distributions exhibited by all species in multiple taxon-area cladograms, including widespread species and reticulated area…”
Inferring dispersal: a Bayesian approach to phylogeny‐based island biogeography, with special reference to the Canary Islands (2008, methodology): “Model-based approaches to historical biogeography, such as event-based parsimony or likelihood methods, have been criticized in the literature, mainly by proponents of phylogenetic biogeography (Brooks et al., 2001; Van Veller et al., 2003; Wojcicki & Brooks, 2005), for being methods that search for”
Phylogeographic information systems: putting the geography into phylogeography (2006, methodology): “…techniques of ancestral area analysis (Bremer, 1992, 1995), dispersal vicariance analysis (Ronquist, 1997) and secondary BPA (Brooks, 1990; Brooks et al., 2001) because they have been (Bremer, 1992; Taberlet et al., 1998), or potentially could be (Riddle & Hafner, 2004), applied to…”
Evaluating the influence of connectivity and distance on biogeographical patterns in the south‐western deserts of North America (2016, background): “…construction of a historical narrative (Castoe et al., 2009), or construction of total area cladograms from the area cladograms of several taxa (e.g. Brooks et al., 2002) – the field is clearly moving in the direction of statistical inference with probabilistic, parametric models (Ree & Sanmart…”
Critique of parsimony analysis of endemicity as a method of historical biogeography (2003, methodology): “Brooks et al. (2001) describe additional steps after homoplasy has been inferred in an area cladogram that has been derived with parsimony analysis.”
The Biogeographic History of Mesoamerican Primates (2006, methodology): “As one means of exploring various historical biogeographic reconstructions, possible scenarios were tested using Brooks Parsimony Analysis (BPA) (Brooks and McLennan, 2001, 2002; Brooks et al., 2001 ).”
A step-wise approach to integrating phylogeographic and phylogenetic biogeographic perspectives on the history of a core North American warm deserts biota (2006, methodology): “through implementation of primary and secondary BPA (Brooks et al., 2001; Van Veller and Brooks, 2001).”
Nestedness of Southern Ocean island biotas: ecological perspectives on a biogeographical conundrum (2004, methodology): “clustering based on similarity or on parsimony analysis of endemicity), and the problems associated with them (for discussion see Myers & Giller, 1988; Morrone & Crisci, 1995; Brooks et al., 2001; Brooks & van Veller, 2003).”
Cladistic analysis of distributions and endemism (CADE): using raw distributions of birds to unravel the biogeography of the South American aridlands (2005, background): “Brooks parsimony analysis (BPA; Wiley, 1988; Brooks et al., 2001), for example, will also recover completely correct historical relationships only under particular speciation scenarios.”