Rapid Protein Side-Chain Packing via Tree Decomposition

By Jinbo Xu. 2005

91 citations recorded by the source corpus.

Subfields: Biomedical Engineering, Molecular Biology

How researchers see this paper

The researchers whose trusted networks rank it highest, strongest advocate first. Every researcher gets a different order.

In Biomedical Engineering

1. Dina Schneidman-Duhovny
2. Torsten Schwede
3. Haim J. Wolfson
4. Ruth Nussinov
5. Efrat Mashiach
6. Nelly Andrusier

In Molecular Biology

1. Torsten Schwede
2. Gabriel Studer
3. Haim J. Wolfson
4. Ruth Nussinov
5. Nelly Andrusier
6. Lorenza Bordoli
7. Efrat Mashiach
8. Dina Schneidman-Duhovny

Citations in the corpus

• SWISS-MODEL: homology modelling of protein structures and complexes (2018, positive): “The optimal configuration of rotamers is estimated us-ing the graph based TreePack algorithm (53) by minimizing the SCWRL4 energy function (54).”
• FireDock: a web server for fast interaction refinement in molecular docking (2008, methodology): “One of the main differences between the refinement methods is in the approach used for side-chain optimization: Monte-Carlo (MC) (12,13), graph theory-based methods (14,15), linear programming (LP) (16), etc.”