Phylogenetics : the theory of phylogenetic systematics

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Direct long‐distance dispersal shapes a New World amphitropical disjunction in the dispersal‐limited dung moss Tetraplodon (Bryopsida: Splachnaceae) (2014, background): “Three chloroplast loci (atpB–rbcL, rps4 and trnG) and one nuclear locus (ITS2) were targeted based on amplification success and informativeness at infraspecific and infrageneric levels (Stech & Quandt, 2010).”
Optimal Transport Kernels for Sequential and Parallel Neural Architecture Search (2020, background): “A metric d : Ω × Ω → R + is a tree metric if there exists a tree T with positive edge lengths such that ∀ x ∈ Ω , then x is a node of T ; and ∀ x, z ∈ Ω , d ( x, z ) is equal to the length of the (unique) path between x and z (Semple & Steel, 2003) (§7, p.145–182).”
TNT version 1.6, with a graphical interface for MacOS and Linux, including new routines in parallel (2023, methodology): “…In addition to tree-searches, TNT includes several routines that can be time-consuming: calculation of agreement subtrees (an NP-complete problem; Semple and Steel, 2003), identiﬁcation of rogue taxa (with various methods, including application of TBR-swapping), and reﬁnement of taxon sets to…”